PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G231300.9
Common NameB456_001G231300, LOC105804451
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 148aa    MW: 16512.1 Da    PI: 11.509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G231300.9genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.79.2e-11109146347
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                          +GV++  k+ +W A I++      +k+++lg+ g+ eeAa++++
  Gorai.001G231300.9 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYD 146
                         79**98..47*********4.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-4108147IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-6109147IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-4111147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGKNSVL TPLPRFFGNG NALETSSQNA KSVSVHPMPL DSINRMHGKS  60
IPMVSCGSPN VSGSGSSKEH HNQPFPGQLI KRRKRHRRKH VQNQEPCLMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492539.11e-106PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_012492549.11e-106PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_012492557.11e-106PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP94e-23ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0D2LWB81e-106A0A0D2LWB8_G
TrEMBLA0A0D2QME81e-106A0A0D2QME8_G
STRINGPOPTR_0002s24750.19e-61(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.22e-26ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]